Index

A

add_cut_points_to_region_tree() (in module atactk.metrics) add_lists() (in module atactk.util) aggregate_scores() (in module atactk.metrics) atactk (module)

atactk.command (module) atactk.data (module) atactk.metrics (module) atactk.util (module)

C

check_bins_for_overlap() (in module atactk.command) complement() (in module atactk.data)

count_cut_points() (in module atactk.metrics) count_features() (in module atactk.data)

E

ExtendedFeature (class in atactk.data)

F

feature_end (atactk.data.ExtendedFeature attribute) feature_length (atactk.data.ExtendedFeature attribute) feature_start (atactk.data.ExtendedFeature attribute)

filter_aligned_segments() (in module atactk.data) find_cut_point() (in module atactk.metrics)

M

make_fastq_pair_reader() (in module atactk.data)

N

name (atactk.data.ExtendedFeature attribute)

O

open_alignment_file() (in module atactk.data)

open_maybe_gzipped() (in module atactk.data)

P

parse_bins() (in module atactk.command)

partition() (in module atactk.util)

R

read_features() (in module atactk.data) reduce_scores() (in module atactk.metrics) reference (atactk.data.ExtendedFeature attribute)

region_length (atactk.data.ExtendedFeature attribute) reverse_complement() (in module atactk.data)

S

score (atactk.data.ExtendedFeature attribute) score_feature() (in module atactk.metrics)

strand (atactk.data.ExtendedFeature attribute)

T

take() (in module atactk.util)