atactk: a toolkit for ATAC-seq data

• Introduction
  • What’s in the box?
    • Programs we’ve found useful in ATAC-seq pipelines
    • A Python library you can use in your own tools for processing ATAC-seq data
  • License
• Installation
  • Requirements
• Usage
  • Command-line applications
    • Adapter trimming
    • Cut matrix generation
      • Discrete matrices
      • Aggregate matrices
      • Binning
    • Creating ATAC-seq signal plots for motifs
  • Using the atactk library
• Getting help
• Contributing
  • Contributing knowledge
  • Contributing code
  • Pull Request Guidelines
• Credits
• History
  • 0.1.5 (2016-01-08)
  • 0.1.4 (2015-12-17)
  • 0.1.3 (2015-12-10)
  • 0.1.2 (2015-12-06)
  • 0.1.1 (2015-12-01)
  • 0.1.0 (2015-10-31)

Indices and tables

• Index
• Module Index