Credits

The atactk package was built by the Parker Lab at the University of Michigan, with contributions from:

• John Hensley
• Ricardo D’Oliveira Albanus
• Stephen Parker

The trim_adapters utility is based on a script by Jason Buenrostro (see the original ATAC-seq paper: Buenrostro, Jason D; Giresi, Paul G; Zaba, Lisa C; Chang, Howard Y; Greenleaf, William J. 2013. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat Meth 10, 1213–1218.)