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A
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C
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E
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F
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M
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N
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O
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P
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R
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S
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T
A
add_cut_points_to_region_tree() (in module atactk.metrics)
add_lists() (in module atactk.util)
aggregate_scores() (in module atactk.metrics)
atactk (module)
atactk.command (module)
atactk.data (module)
atactk.metrics (module)
atactk.util (module)
C
check_bins_for_overlap() (in module atactk.command)
complement() (in module atactk.data)
count_cut_points() (in module atactk.metrics)
count_features() (in module atactk.data)
E
ExtendedFeature (class in atactk.data)
F
feature_end (atactk.data.ExtendedFeature attribute)
feature_length (atactk.data.ExtendedFeature attribute)
feature_start (atactk.data.ExtendedFeature attribute)
filter_aligned_segments() (in module atactk.data)
find_cut_point() (in module atactk.metrics)
M
make_fastq_pair_reader() (in module atactk.data)
N
name (atactk.data.ExtendedFeature attribute)
O
open_alignment_file() (in module atactk.data)
open_maybe_gzipped() (in module atactk.data)
P
parse_bins() (in module atactk.command)
partition() (in module atactk.util)
R
read_features() (in module atactk.data)
reduce_scores() (in module atactk.metrics)
reference (atactk.data.ExtendedFeature attribute)
region_length (atactk.data.ExtendedFeature attribute)
reverse_complement() (in module atactk.data)
S
score (atactk.data.ExtendedFeature attribute)
score_feature() (in module atactk.metrics)
strand (atactk.data.ExtendedFeature attribute)
T
take() (in module atactk.util)
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